Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs55724940 chr3:10092179 C/T 3.94E-5 169 23.77 18.33 16.87 KM Plot
UCEC rs55790444 chr7:20648253 A/G 0 173 22.67 20.13 4.33 KM Plot
UCEC rs55853751 chr14:73661236 TG/T 4.61E-7 173 22.57 31.47 10.33 KM Plot
UCEC rs55873311 chr14:73377369 C/T 5.51E-7 170 22.9 20.98 10.33 KM Plot
UCEC rs55973507 chr7:20657009 T/G 0 173 22.67 20.13 4.33 KM Plot
UCEC rs55981050 chr2:98295231 G/A 1.11E-16 172 26.27 18.67 2.03 KM Plot
UCEC rs56016843 chr7:2062621 C/T 8.75E-9 172 22.38 22.97 4.5 KM Plot
UCEC rs56075983 chr7:20647794 T/C 0 173 22.67 20.13 4.33 KM Plot
UCEC rs56106746 chr14:75391629 T/C 6.68E-5 170 22.7 19.57 1.67 KM Plot
UCEC rs56144764 chr7:20675016 T/G 1.12E-11 173 22.63 19.17 4.33 KM Plot
UCEC rs56164718 chr14:98679263 A/T 0.000113 169 22.38 21.57 15.57 KM Plot
UCEC rs56172120 chr17:45824904 G/A 4.44E-5 174 24.35 21.03 16.57 KM Plot
UCEC rs56172155 chr15:42882182 C/T 6.03E-5 174 21.9 25.55 22.43 KM Plot
UCEC rs56182568 chr16:3589120 T/C 3.09E-12 169 22.57 23.82 2.3 KM Plot
UCEC rs56750563 chr14:73598644 C/G 4.47E-7 173 22.57 22.63 10.33 KM Plot